USC The Snipper 4
app suite

Europe-East Asia-Africa-America-Oceania Marker Panels


34-plex (previous) with rs727811
Training set ordered by ascending rs number
CodeLocusSNaPshot basesSBE directiondbSNP bases
1P11rs10141763ATforwardACT
2A29rs1024116AGreverseCT
3P06ars10843344CTforwardCT
4P08rs12913832AGforwardACG
5P03rs1321333CTreverseAGT
6A52rs1335873ATforwardACT
7P22ars1426654CTreverseAGT
8P21rs1498444ACreverseGT
9P13rs1573020AGforwardAG
10P25ars16891982CGforwardACG
11P12rs182549CTforwardCT
12A13rs1886510AGforwardAG
13P09ars1978806CTreverseAG
14P23rs2026721AGforwardACGT
15A40rs2040411AGforwardAG
16P15rs2065160AGforwardACGT
17P18rs2065982AGreverseCT
18P17rs2303798CTreverseAG
19P01rs2304925GTforwardACGT
20PO7rs239031CTreverseACG
21P16ars2572307AGforwardAG
22P04rs2814778CTforwardCT
23P19rs3785181CTforwardCGT
24P24rs4540055ACTforwardACT
25P27rs5030240ACGforwardACG
26P02rs5997008ACforwardACT
27A21rs722098AGforwardACG
28A30rs727811ACreverseAGT
29P26rs730570CTreverseAG
30P10rs773658CGforwardACGT
31POSrs7897550CTreverseAGT
32P20rs881929GTforwardACGT
33P14rs896788CTforwardCGT
34A07rs917118AGreverseCT
34-plex (revised) with rs3827760
Training set ordered by ascending rs number
CodeLocusSNaPshot basesSBE directiondbSNP bases
1P11rs10141763ATforwardACT
2A29rs1024116AGreverseCT
3P06ars10843344CTforwardCT
4P08rs12913832AGforwardACG
5P03rs1321333CTreverseAGT
6A52rs1335873ATforwardACT
7P22ars1426654CTreverseAGT
8P21rs1498444ACreverseGT
9P13rs1573020AGforwardAG
10P25ars16891982CGforwardACG
11P12rs182549CTforwardCT
12A13rs1886510AGforwardAG
13P09ars1978806CTreverseAG
14P23rs2026721AGforwardACGT
15A40rs2040411AGforwardAG
16P15rs2065160AGforwardACGT
17P18rs2065982AGreverseCT
18P17rs2303798CTreverseAG
19P01rs2304925GTforwardACGT
20PO7rs239031CTreverseACG
21P16ars2572307AGforwardAG
22P04rs2814778CTforwardCT
23P19rs3785181CTforwardCGT
24P28rs3827760CTreverseACG
25P24rs4540055ACTforwardACT
26P27rs5030240ACGforwardACG
27P02rs5997008ACforwardACT
28A21rs722098AGforwardACG
29P26rs730570CTreverseAG
30P10rs773658CGforwardACGT
31POSrs7897550CTreverseAGT
32P20rs881929GTforwardACGT
33P14rs896788CTforwardCGT
34A07rs917118AGreverseCT
46-plex AIM-lndels
Training set ordered by electrophoresis order
CodeLocusDetected allelesAlleles coded as (Variant description)
1MID-1470rs2307666Del/InsA/C
2MID-777rs1610863Del/InsA/C
3MID-196rs16635Del/InsA/C
4MID-881rs1610965Del/InsA/C
5MID-3122rs35451359Del/InsA/C
6MID-548rs140837Del/InsA/C
7MID-659rs1160893Del/InsA/C
8MID-2011rs2308203Del/InsA/C
9MID-2929rs33974167Del/InsA/C
10MID-593rs1160852Del/InsA/C
11MID-798rs1610884Del/InsA/C
12MID-1193rs2067280Del/InsA/C
13MID-1871rs2308067Del/InsA/C
14MID-17rs4183Del/InsA/C
15MID-2538rs3054057Del/InsA/C
16MID-1644rs2307840Del/InsA/C
17MID-3854rs60612424Del/InsA/C
18MID-2275rs3033053Del/InsA/C
19MID-94rs16384Del/InsA/C
20MID-3072rs34611875Del/InsA/C
21MID-772rs1610859Del/InsA/C
22MID-2313rs3045215Del/InsA/C
23MID-397rs25621Del/InsA/C
24MID-1636rs2307832Del/InsA/C
25MID-51rs16343Del/InsA/C
26MID-2431rs3031979Del/InsA/C
27MID-2264rs34122827Del/Ins/VarA/C/G (2D68Tdel)
28MID-2256rs133052Del/InsA/C
29MID-128rs6490Del/InsA/C
30MID-15rs4181Del/InsA/C
31MID-2241rs3030826Del/InsA/C
32MID-419rs140708Del/InsA/C
33MID-943rs1611026Del/InsA/C
34MID-159rs16438Del/InsA/C
35MID-2005rs2308161Del/InsA/C
36MID-250rs16687Del/InsA/C
37MID-1802rs2307998Del/InsA/C
38MID-1607rs2307803Del/InsA/C
39MID-1734rs2307930Del/InsA/C
40MID-406rs25630Del/InsA/C
41MID-1386rs2307582Del/InsA/C
42MID-1726rs2307922Del/InsA/C
43MID-3626rs11267926Del/InsA/C
44MID-360rs25584Del/Ins/VarA/C/G (1D8Tins)
45MID-1603rs2307799Del/InsA/C
46MID-2719rs34541393Del/InsA/C

For your convenience, we also provide marker lists (minus stands for reverse direction):

34-plex (previous) with rs727811: rs10141763, -rs1024116, rs10843344, rs12913832, -rs1321333, rs1335873, -rs1426654, -rs1498444, rs1573020, rs16891982, rs182549, rs1886510, -rs1978806, rs2026721, rs2040411, rs2065160, -rs2065982, -rs2303798, rs2304925, -rs239031, rs2572307, rs2814778, rs3785181, rs4540055, rs5030240, rs5997008, rs722098, -rs727811, -rs730570, rs773658, -rs7897550, rs881929, rs896788, -rs917118

34-plex (revised) with rs3827760: rs10141763, -rs1024116, rs10843344, rs12913832, -rs1321333, rs1335873, -rs1426654, -rs1498444, rs1573020, rs16891982, rs182549, rs1886510, -rs1978806, rs2026721, rs2040411, rs2065160, -rs2065982, -rs2303798, rs2304925, -rs239031, rs2572307, rs2814778, rs3785181, -rs3827760, rs4540055, rs5030240, rs5997008, rs722098, -rs730570, rs773658, -rs7897550, rs881929, rs896788, -rs917118

46-plex AIM-lndels: rs2307666, rs1610863, rs16635, rs1610965, rs35451359, rs140837, rs1160893, rs2308203, rs33974167, rs1160852, rs1610884, rs2067280, rs2308067, rs4183, rs3054057, rs2307840, rs60612424, rs3033053, rs16384, rs34611875, rs1610859, rs3045215, rs25621, rs2307832, rs16343, rs3031979, rs34122827, rs133052, rs6490, rs4181, rs3030826, rs140708, rs1611026, rs16438, rs2308161, rs16687, rs2307998, rs2307803, rs2307930, rs25630, rs2307582, rs2307922, rs11267926, rs25584, rs2307799, rs34541393



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