The Snipper 3

app suite

SNP codeChrGeneSBE basesSBE directiondbSNP bases
1rs112903815HERC2AGreverseCT
2rs1154746416MC1RAGforwardAG
3rs1291383215HERC2AGforwardACG
4rs1293126716FANCACGforwardCG
5rs180500616MC1RACforwardACG
6rs180500716MC1RAGreverseACGT
7rs180500816MC1RAGreverseCT
8rs180500916MC1RCGforwardACG
9rs287775SLC45A2ACforwardACG
10rs3526487511TPCN2ATforwardACGT
11rs477813815OCA2CTreverseACGT
12rs749517415OCA2CTreverseAGT


Help interpreting results?

Classification as individual having
fair-dark or red-blond-brown-black hair


Step 1: Choose populations

2 populations (fair or dark hair), rs1129038-12913832 haplotype

2 populations (fair or dark hair), no haplotype

4 populations (red, blond, brown, or black hair), rs1129038-12913832 haplotype

4 populations (red, blond, brown, or black hair), no haplotype

Step 2: Choose classifier

Naive Bayes with allele frequencies (Hardy-Weinberg principle applies)

Multinomial logistic regression

Genetic distance algorithm (allele and genotype frequency versions)

Step 3: Data input

Type 12 markers of the individual to classify as appropriate. This is the list of required rs-numbers:

-rs1129038, rs11547464, rs12913832, rs12931267, rs1805006, -rs1805007, -rs1805008, rs1805009, rs28777, rs35264875, -rs4778138, -rs7495174.

Minus stands for reverse direction, see left-hand graphic for more details on the markers. For instance, the following 12 marker profile would be valid in the case of 2 or 4 populations, regardless of whether the rs1129038-12913832 haplotype is being considered or not:

AAGGGGCGCCGGGGGGAAAATTTT

Bases can be upper or lowercase. Blanks will be removed. Gaps must be entered as n or N.